SNP Profiles matching H NITIDA

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_Input profile
TTCCAATTGGCCGGGGCCAATTCCGGCC
1._RUQ_1182
TTCCAATTGG-GGGGCCAATTCCGGCC
2._LCT_EEN_432
__AATT_CC-GGCC_TTCCGGCC
3._LCT_EEN_231
__AATT_CC-GGCC_TTCCGGCC
4._LCT_EEN_346
__AATT_CC-GGCC_TTCCGGCC
5._LCT_EEN_85
__AATT_CC--CC_TTCCGGCC
6._LCT_EEN_241
__AATT_CCGGAGCC_TTCCGGCC
7._LCT_EEN_241
__AATT_CCGGAGCC_TTCCGGCC
8._LCT_EEN_241
__AATT_CCGGAGCC_TTCCGGCC
9._LCT_EEN_108_/S
__AATT_CC-GGCC_TTCCGGCC
10._LCT_EEN_195
__AATT_CC-AGCC_TTCCGGCC
11._LCT_EEN_195
__AATT_CC-AGCC_TTCCGGCC
12._LCT_EEN_220
__AATT_CC-GGCC_TTCCGGCC
13._LCT_EEN_33
__AATT_CC-GGCC_TTCCGGCC
14._LCT_EEN_63
__AATT_CC-GGCC_TTCCGGCC
15._LCT_EEN_84
__ACTT_CC-AGCC_TTCCGGCC
16._LCT_EEN_87
__AATT_CC-AGCC_TTCCGGCC
17._LCT_EEN_241
__AATT_CCGGAGCC_TTCCGGCC
18._LCT_EEN_142
__AATT_CC-GGCC_TTCCGGCC
19._LCT_EEN_217
__AATT_CC-GGCC_TTCCGGCC
20._LCT_EEN_218
__AATT_CC-GGCC_TTCCGGCC
21._LCT_EEN_282
__AATT_CC-GGCC_TTCCGGCC
22._LCT_EEN_282
__AATT_CC-GGCC_TTCCGGCC
23._LCT_EEN_300
__AATT_CC-GGCC_TTCCGGCC
24._LCT_EEN_312
__AATT_CC-GGCC_TTCCGGCC
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_Input profile
CCTTGGAGTTCCGGGGTTAACCCCGGAA
1._RUQ_1182
CCTTGG-TTCCGGGGTTAACCTTGGAA
2._LCT_EEN_432
__GG___CCGGTTAA_CC__
3._LCT_EEN_231
__GG___CC-TTAA_CC__
4._LCT_EEN_346
__GG___CCGGTTAA_CC__
5._LCT_EEN_85
__GG___CGGGTTAA_CC__
6._LCT_EEN_241
__GG___CG_TTAA_CC__
7._LCT_EEN_241
__GG___CG_TTAA_CC__
8._LCT_EEN_241
__GG___CG_TTAA_CC__
9._LCT_EEN_108_/S
__GG___CCGGTTAA_CC__
10._LCT_EEN_195
__GG___GGGGTTAA_CT__
11._LCT_EEN_195
__GG___GGGGTTAA_CT__
12._LCT_EEN_220
__GG___CCCGTTAA_CC__
13._LCT_EEN_33
__GG___CCGGTTAA_CC__
14._LCT_EEN_63
__GG___CCGGTTAA_CC__
15._LCT_EEN_84
__GG___GGGGTTAA_CC__
16._LCT_EEN_87
__GG___CCGGTTAA_CC__
17._LCT_EEN_241
__GG___CG_TTAA_CC__
18._LCT_EEN_142
__GT___CC-TTAA_CC__
19._LCT_EEN_217
__GG___CC-TTAA_CC__
20._LCT_EEN_218
__GG___CCGGTTAA_CC__
21._LCT_EEN_282
__GG___CC-TTAA_CC__
22._LCT_EEN_282
__GG___CC-TTAA_CC__
23._LCT_EEN_300
__GG___CCGGTTAA_CC__
24._LCT_EEN_312
__GG___CCGGTTAA_CC__
 2930313233         
_Input profile
TTGGCCCTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1182
TTGGCCCCGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._LCT_EEN_432
_GG_CTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._LCT_EEN_231
_GG_CTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._LCT_EEN_346
_GG_CT-X_XX_XX_XX_XX_XX_XX_XX_XX_X
5._LCT_EEN_85
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._LCT_EEN_241
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._LCT_EEN_241
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._LCT_EEN_241
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._LCT_EEN_108_/S
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._LCT_EEN_195
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._LCT_EEN_195
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._LCT_EEN_220
_GG_CTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._LCT_EEN_33
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._LCT_EEN_63
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._LCT_EEN_84
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._LCT_EEN_87
_GG_CTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._LCT_EEN_241
___TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._LCT_EEN_142
_GG_CTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._LCT_EEN_217
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._LCT_EEN_218
_GG_TT-X_XX_XX_XX_XX_XX_XX_XX_XX_X
21._LCT_EEN_282
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._LCT_EEN_282
_GG_TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._LCT_EEN_300
_GG_TT-X_XX_XX_XX_XX_XX_XX_XX_XX_X
24._LCT_EEN_312
_GG_CC-X_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: H_NITIDA RUQ_1179

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._T_SPECIOSUM RUQ_1182

95.2 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_432

94.4 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

3._LCT_EEN_231

94.1 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

4._LCT_EEN_346

94.1 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N2/430 T1
 Dapeng Zhang, 2014

5._LCT_EEN_85

94.1 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D254 T3
 Dapeng Zhang, 2014

6._LCT_EEN_241

91.7 %
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 6
 Dapeng Zhang, 2016

7._LCT_EEN_241

91.7 %
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 4
 Dapeng Zhang, 2016

8._LCT_EEN_241

91.7 %
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._LCT_EEN_108_/S

91.7 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D336 T1
 Dapeng Zhang, 2014

10._LCT_EEN_195

91.7 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

11._LCT_EEN_195

91.7 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 134 T1
 Dapeng Zhang, 2014

12._LCT_EEN_220

91.7 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

13._LCT_EEN_33

91.7 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

14._LCT_EEN_63

91.7 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

15._LCT_EEN_84

91.7 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 19 T1
 Dapeng Zhang, 2014

16._LCT_EEN_87

91.7 %
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 136 T2
 Dapeng Zhang, 2014

17._LCT_EEN_241

91.2 %
17 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 3
 Dapeng Zhang, 2016

18._LCT_EEN_142

91.2 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

19._LCT_EEN_217

91.2 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

20._LCT_EEN_218

91.2 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

21._LCT_EEN_282

91.2 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

22._LCT_EEN_282

91.2 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

23._LCT_EEN_300

91.2 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N2/448 T1
 Dapeng Zhang, 2014

24._LCT_EEN_312

91.2 %
17 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP151 5TcSNP174
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP364
11TcSNP372 12TcSNP534 13TcSNP560 14TcSNP591 15TcSNP602
16TcSNP702 17TcSNP723 18TcSNP731 19TcSNP799 20TcSNP823
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP998 25TcSNP999
26TcSNP1060 27TcSNP1063 28TcSNP1111 29TcSNP1126 30TcSNP1253
31TcSNP1439 32TcSNP1442 33TcSNP1484